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GBrowse - Generic Genome Browser
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GBrowse is a tool to analyze genomic data graphically. User can analyze the data by submitting the chromosome wise range and by turning-on the data tracks as required.
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MEME - Multiple EM for Motif Elicitaion
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MEME is a motif discovery tool for DNA and Protein sequences. A motif is a sequence pattern that occurs repeatedly in a group of related DNA or protein sequences. Here, MEME will take piRNA sequences as input and will search for the number motifs as requested by the user.
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UNAFold - Structure prediction tool
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UNAFold is a software for folding nucleic acid sequences and hybridization prediction. UNAFold stands for "Unified Nucleic Acid Folding". Sequences submitted will be folded with the desired parameters set by the user. Folded sequences will now be displayed along with the thermodynamic details of the structures.
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miRanda - piRNA Target finder tool
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miRanda is an algorithm which helps to detect potential target sites in the genomic sequences. The piRNAs are supposed to occur in the repetitive sequences of genome. This analysis tool help researchers to find out the complementary sequences of piRNAs in repeat database.
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